LOVD GATM homepage

General information
Gene name L-arginine:glycine amidinotransferase, nuclear gene encoding mitochondrial
Gene symbol GATM
Chromosome Location 15q21.1
Database location grenada.lumc.nl
Curator Gajja Salomons
PubMed references View all (unique) PubMed references in the GATM database
Date of creation May 07, 2009
Last update August 30, 2016
Version GATM160830
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Reference sequence file coding DNA reference sequence for describing sequence variants
Genomic refseq ID NC_000015.9
Transcript refseq ID NM_001482.2
Total number of unique DNA variants reported 24
Total number of individuals with variant(s) 44
Total number of variants reported 80
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Graphical displays and utilities
Summary tables Summary of all sequence variants in the GATM database, sorted by type of variant (with graphical displays and statistics)
UCSC Genome Browser Show variants in the UCSC Genome Browser (compact view)
Ensembl Genome Browser Show variants in the Ensembl Genome Browser (compact view)
NCBI Sequence Viewer Show distribution histogram of variants in the NCBI Sequence Viewer

Sequence variant tables
Unique sequence variants Listing of all unique sequence variants in the GATM database, without patient data
Complete sequence variant listing Listing of all sequence variants in the GATM database
Variants with no known pathogenicity Listing of all GATM variants reported to have no noticeable phenotypic effect (note: excluding variants of unknown effect)

Search the database
By type of variant View all sequence variants of a certain type
Simple search Query the database by selecting the most important variables (exon number, type of variant, disease phenotype)
Advanced search Query the database by selecting a combination of variables
Based on patient origin View all variants based on your patient origin search terms

Links to other resources
Homepage http://www.LOVD.nl/GATM
HGNC 4175
Entrez Gene 2628
OMIM - Gene 602360
OMIM - Disease arginine:glycine amidinotransferase (GATMD)
GeneTests GATM
External link Orphanet

Copyright & disclaimer
The contents of this LOVD database are the intellectual property of the respective curator(s). Any unauthorised use, copying, storage or distribution of this material without written permission from the curator(s) will lead to copyright infringement with possible ensuing litigation. Copyright © 2018. All Rights Reserved. For further details, refer to Directive 96/9/EC of the European Parliament and the Council of March 11 (1996) on the legal protection of databases.

We have used all reasonable efforts to ensure that the information displayed on these pages and contained in the databases is of high quality. We make no warranty, express or implied, as to its accuracy or that the information is fit for a particular purpose, and will not be held responsible for any consequences arising out of any inaccuracies or omissions. Individuals, organisations and companies which use this database do so on the understanding that no liability whatsoever either direct or indirect shall rest upon the curator(s) or any of their employees or agents for the effects of any product, process or method that may be produced or adopted by any part, notwithstanding that the formulation of such product, process or method may be based upon information here provided.